Protein domains in Prosite database.
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| Ribosomal protein L6 signature 2 | [QLS]-x(3)-[LIVM]-x(2)-[KRWYF]-x(2)-R-x-F-x-D-G-[LIVM]-[YF]-[LIVM]-x(2)-[KR]. |
| Ribosomal protein L6e signature | N-x(2)-P-[LI]-R-R-x(4)-[FY]-V-I-A-T-S-x(1,2)-K. |
| Ribosomal protein L7Ae signature | [CAS]-x(4)-[IVA]-P-[FY]-x(2)-[LIVM]-x-[GSQNK]-[KRQ]-x(2)-L-G. |
| Ribosomal protein L9 signature | G-x(2)-[GNF]-x(4)-[VAI]-x(2)-G-[FY]-x(2)-[NH]-[FYWL]-L-x(5)-[GA]-x(3)-[STNG]. |
| Ribosomal protein S10 signature | [AV]-x(3)-[GDNSR]-[LIVMSTAG]-x(3)-G-P-[LIVM]-x-[LIVM]-P-T. |
| Ribosomal protein S11 signature | [LIVMFR]-x-[GSTACQI]-[LIVMF]-x(1,2)-[GSTALVM]-x(0,1)-[GSN]-[LIVMFY]-x-[LIVM]-x(4)-[DEN]-x-[TS]-[PS]-x-[PA]-[STCHF]-[DN]. |
| Ribosomal protein S12 signature | [RK]-x-P-N-S-[AR]-x-R. |
| Ribosomal protein S12e signature | [SA]-[LI]-[KREQP]-x(2)-[LIVM]-x(2)-[SA]-x(3)-[DNG]-G-[LIV]-x(2)-G-[LIV]. |
| Ribosomal protein S13 signature | [KRQSEAT]-[GS]-x-R-H-x(2)-[GSNHKLCD]-x(2)-[LIVMCT]-[RNH]-G-Q. |
| Ribosomal protein S14 signature | [RP]-x(0,1)-C-x(11,12)-[LIVMF]-{L}-[LIVMF]-[SC]-[RG]-x-{D}-{PK}-[RN]. |
| Ribosomal protein S15 signature | [LIVM]-x(2)-H-[LIVMFY]-x(3)-{S}-x-D-x(2)-[STAGN]-x(3)-[LF]-x(2)-{A}-x(6)-[LIVM]-x(2)-[FY]. |
| Ribosomal protein S16 signature | [LIVMT]-x-[LIVM]-[KR]-L-[STAK]-R-{E}-G-[AKR]. |
| Ribosomal protein S17 signature | G-D-x-[LIV]-x-[LIVA]-x-[QEK]-x-[RK]-P-[LIV]-S. |
| Ribosomal protein S17e signature | [IVDYPKS]-x-[ST]-K-x-[LIVMTF]-[RIKM]-N-x-[IV]-[SA]-G-[FY]-x-[TV]-[HKRA]. |
| Ribosomal protein S18 signature | [IVRLP]-[DYN]-[YLF]-x(2,3)-[LIVMTPFS]-x(2)-[LIVM]-x(2)-[FYTS]-[LIVMT]-[STNQG]-[DERPN]-x(1,2)-[GYAH]-[KCR]-[LIVM]-x(3)-[RHG]-[LIVMASR]. |
| Ribosomal protein S19 signature | [STDNQ]-G-[KRNQMHSI]-x(6)-[LIVM]-x(4)-[LIVMC]-[GSD]-x(2)-[LFI]-[GAS]-[DE]-[FYM]-x(2)-[ST]. |
| Ribosomal protein S19e signature | P-x(6)-[SANG]-x(2)-[LIVMAC]-x-R-x-[ALIV]-[LV]-[QH]-x-L-[EQ]. |
| Ribosomal protein S2 signature 1 | [LIVMFA]-x-{GPRV}-[LIVMFYC](2)-{LPC}-[STAC]-[GSTANQEKR]-[STALV]-[HY]-[LIVMF]-G. |
| Ribosomal protein S2 signature 2 | P-x(2)-[LIVMF](2)-[LIVMS]-x-[GDN]-x(3)-[DENL]-x(3)-[LIVM]-x-E-x(4)-[GNQKRH]-[LIVM]-[AP]. |
| Ribosomal protein S21 signature | [DE]-x-A-[LIY]-[KR]-[RA]-[FL]-K-[KR]-x(3)-[KR]. |
| Ribosomal protein S21e signature | [LV]-Y-[IVC]-P-R-K-C-S-[SAT]. |
| Ribosomal protein S24e signature | [FYAT]-G-x(2)-[KREILYV]-[STAI]-x-[GCAVI]-[FYKRE]-[GTALV]-x-[LIVYA]-Y-[DENQAKY]-[STDN]-x(7)-E. |
| Ribosomal protein S26e signature | [YH]-C-[VI]-[SA]-C-A-I-H. |
| Ribosomal protein S27e signature | [QKRTE]-C-x(2)-C-x(6)-F-[GSDA]-x-[PSA]-x(5)-C-x(2)-C-[GSAQ]-x(2)-[LIV]-x(2)-[PS]-x-G. |
| Ribosomal protein S28e signature | E-[ST]-[EA]-R-E-A-[RK]-x-[LI]. |
| Ribosomal protein S3 signature | [GSTA]-[KR]-x(6)-G-x-[LIVMT]-x(2)-[NQSCH]-x(1,3)-[LIVFCA]-x(3)-[LIV]-[DENQ]-x(7)-[LMT]-x(2)-G-x(2)-[GS]. |
| Ribosomal protein S3Ae signature | [LIV]-x-[GHN]-R-[IVNT]-x-E-x-[SCT]-[LV]-x-[DE]-[LVI]. |
| Ribosomal protein S4 signature | [LIVM]-[DERA]-x-R-[LI]-x(3)-[LIVMC]-[VMFYHQL]-[KRTS]-x(3)-[STAGCVF]-x-[ST]-x(3)-[SAI]-[KRQ]-x-[LIVMF](2). |
| Ribosomal protein S4e signature | H-x-K-R-[LIVMF]-[SANK]-x-P-x(2)-[WY]-x-[LIVM]-x-[KRP]. |
| Ribosomal protein S5 signature | G-[KRQEA]-x(3)-[FYVIM]-x-[ACVTI]-x(2)-[LIVMA]-[LIVMAT]-[AG]-[DN]-x(2,3)-G-x-[LIVMA]-[GS]-x-[SAG]-x(5,6)-[DEQGHS]-[LIVMARFY]-x(2,3)-[AS]-[LIVMFRY]. |
| Ribosomal protein S6 signature | G-x-[KRC]-[DENQRH]-L-[SA]-Y-x-I-[KRNSA]. |
| Ribosomal protein S6e signature | [LIVM]-[STAMR]-G-G-x-[DG]-x(2)-G-x-[PV]-M. |
| Ribosomal protein S7 signature | [DENSK]-x-[LIVMDET]-x(3)-[LIVMFTA](2)-x(6)-G-K-[KR]-x(5)-[LIVMF]-[LIVMFC]-x(2)-[STAC]. |
| Ribosomal protein S7e signature | [KRAI]-L-x-R-E-L-E-K-K-F-[SAPQG]-x-[KRN]-[HED]. |
| Ribosomal protein S8 signature | [GE]-x(2)-[LIV](2)-[STY]-[ST]-{A}-x-G-[LIVM](2)-x(4)-[AG]-[KRHAYIL]. |
| Ribosomal protein S8e signature | [KR]-x(2)-[ST]-G-[GAR]-x(5,6)-[KRHSA]-x-[KRT]-x-[KR]-x-[EA]-[LIMPA]-G. |
| Ribosomal protein S9 signature | [GS]-G-G-x(2)-[GSA]-[QK]-x(2)-[SA]-x(3)-[GSA]-x-[GSTAV]-[KR]-[GSALVD]-[LIFV]. |
| Ribosomal RNA adenine dimethylases signature | [LIVMAC]-[LIVMFYWT]-[DE]-x-G-[STAPVLCG]-G-x-[GAS]-x-[LIVMF]-[ST]-x(2,3)-[LIVMA]-x(5,8)-[LIVMYF]-x-[STAGVLC]-[LIVMFYHCS]-E-x-D. |
| Ribosome-binding factor A signature | [LIVMF]-[QKRHSA]-{E}-x-[LIVMAC]-x(5,6)-[LIVMW]-[RKAYF]-x-[STACIVMF]-[PV]-{LG}-[LIVMF]-x-[FYI]-x(2)-D. |
| Ribulose bisphosphate carboxylase large chain active site | G-x-[DN]-F-x-K-x-D-E. |
| Ribulose-phosphate 3-epimerase family signature 1 | [LIVMF]-H-[LIVMFY]-D-[LIVM]-x-D-x(1,2)-[FY]-[LIVM]-x-N-x-[STAV]. |
| Ribulose-phosphate 3-epimerase family signature 2 | [LIVMA]-x-[LIVM]-M-[ST]-[VS]-x-P-x(3)-[GN]-Q-x(0,1)-[FMK]-x(6)-[NKR]-[LIVMC]. |
| RIO1/ZK6323/MJ0444 family signature | [LIVMY]-[VI]-H-[GA]-D-[LF]-[SN]-E-[FY]-N-x-[LIVM]. |
| Rlu family of pseudouridine synthase signature | [LIVCA]-[NHYTQ]-R-[LI]-[DG]-x(2)-[TV]-[STAC]-G-[LIVAGC]-[LIVMF](2)-[LIVMFGCA]-[SGTACV]. |
| RNA 3'-terminal phosphate cyclase signature | [RH]-G-x(2)-P-x-G(3)-x-[LIV]. |
| RNA methyltransferase trmA family signature 1 | [DN]-P-[PAS]-R-x-G-x(14,19)-[LIVMAF]-[LIVMCAFT]-[YAHG]-x-[SAG]-C-[NAMDSYHKGQ]-x(1,2)-[TNKSI]. |
| RNA methyltransferase trmA family signature 2 | [LIVMF]-[DN]-x-F-P-[QHYWM]-[ST]-x-[HR]-[LIVMFYT]-E. |
| RNA polymerases beta chain signature | G-x-[KN]-[LIVMFA]-[STAC]-[GSTNR]-x-[HSTA]-[GSAI]-[QNH]-K-[GL]-[IVTEC]. |
| RNA polymerases D / 30 to 40 Kd subunits signature | N-[SGAT]-[LIVMF]-R-R-x(9)-[SAR]-x(3)-[VA]-x(4)-N-x-[STA]-x(3)-[DN]-E-x-[LIV]-[GSA]-x-R-[LI]-[GAS]-[LIVM](2)-[PV]. |
| RNA polymerases H / 23 Kd subunits signature | H-[NQEIVMYD]-[LIVMYAS]-V-P-[EKT]-H-x(2)-[LIVM]-x(2)-[DESAG]-[ET]. |
| RNA polymerases K / 14 to 18 Kd subunits signature | [ST]-x-[FY]-E-x-[AT]-R-x-[LIVM]-[GSA]-x-R-[SA]-x-Q. |
| RNA polymerases L / 13 to 16 Kd subunits signature | [LIVMFA]-x(2)-[EYD]-x-[HYN]-[ST]-[LIVMFY]-x-[NSTR]-x-[LIV]-x(3)-[LIVA]-x(4,5)-[VPG]-x(4)-[FY]-x(3)-[HPY]-[PEV]. |
| RNA polymerases M / 15 Kd subunits signature | [FY]-C-x-[DEKSTG]-C-[GNK]-[DNSA]-[LIVMHG]-[LIVM]-x(8,14)-C-x(1,2)-C. |
| RNA polymerases N / 8 Kd subunits signature | [LIVMFD]-[LIVMFP]-P-[LIVM]-x-C-[FL]-[ST]-C-G. |
| ROK family signature | [LIVM]-x(2)-G-[LIVMFCT]-G-x-[GA]-[LIVMFA]-x(3)-{V}-x(4)-G-x(3,5)-[GATP]-{G}-x-G-[RKH]. |
| Rrf2-type HTH domain signature | L-x(3)-[GRS]-[LIVY]-x(2)-[STA]-x(2)-G-x(2)-G-G-[FYIV]-x-[LIF]. |
| Rsu family of pseudouridine synthase signature | G-R-L-D-x(2)-[STA]-x-G-[LIVFA]-[LIVMF](3)-[ST]-[DNST]. |
| Rubredoxin signature | [LIVM]-x-{G}-{R}-W-x-C-P-x-C-[AGD]. |
| S-100/ICaBP type calcium binding protein signature | [LIVMFYW](2)-x(2)-[LKQ]-D-x(3)-[DN]-x(3)-[DNSG]-[FY]-x-[ES]-[FYVC]-x(2)-[LIVMFS]-[LIVMF]. |
| S-adenosyl-L-homocysteine hydrolase signature 1 | [GSAP]-[CS]-N-x-[FYLM]-S-[ST]-[QALKHD]-[DENG]-x-[AV]-[AVTS]-[ADERQ]-[ACSG]-[LIVMCG]. |
| S-adenosyl-L-homocysteine hydrolase signature 2 | [GA]-[KSR]-x(3)-[LIV]-x-G-[FY]-G-x-[VC]-G-[KRL]-[GA]-x(1,2)-[ASC]. |
| S-adenosylmethionine decarboxylase signature | [SA]-[FY]-[LIV]-L-[STN]-E-S-S-[LIVMF]-F-[LIV]. |
| S-adenosylmethionine synthetase signature 1 | [GN]-[AS]-G-D-Q-G-x(3)-G-[FYHG]. |
| S-adenosylmethionine synthetase signature 2 | G-[GA]-G-[ASC]-[FY]-S-x-K-[DE]. |
| SAICAR synthetase signature 1 | [LIVMRPA]-[LIVFY]-[PLNRKG]-[LIVMF]-E-x-[IV]-[LVCATI]-R-x(3)-[TAEYSI]-G-[ST]. |
| SAICAR synthetase signature 2 | [LI]-[IVCAP]-D-x-K-[LIFY]-E-[FI]-G. |
| SAR1 family signature | R-x-[LIVM]-E-[LV]-F-[MPT]-C-S-[LIVM]-[LIVMY]-x-[KRQ]-x-G-Y-x-[DE]-[AG]-[FI]-x-W-[LIVM]-x-[NQK]-Y. |
| Scorpion calcine family signature | C-x(6)-C-x(5)-C-C-x(3)-C-x(9)-R-C. |
| Scorpion short toxins signature | C-x(3)-C-x(6,9)-[GAS]-K-C-[IMQT]-x(3)-C-x-C. |
| SecA family signature | [IV]-x-[IV]-[SA]-T-[NQ]-M-A-G-R-G-x-D-I-x-L. |
| Seminal vesicle protein I repeats signature | [IVM]-x-G-Q-D-x-V-K-x(5)-[KN]-G-x(3)-[STLV]. |
| Seminal vesicle protein II repeats signature | [GSA]-Q-x-K-S-[FY]-x-Q-x-K-[SA]. |
| Serine carboxypeptidases, histidine active site | [LIVF]-x(2)-[LIVSTA]-x-[IVPST]-x-[GSDNQL]-[SAGV]-[SG]-H-x-[IVAQ]-P-x(3)-[PSA]. |
| Serine carboxypeptidases, serine active site | [LIVM]-x-[GSTA]-E-S-Y-[AG]-[GS]. |
| Serine hydroxymethyltransferase pyridoxal-phosphate attachment site | [DEQHY]-[LIVMFYA]-x-[GSTMVA]-[GSTAV]-[ST]-[STVM]-[HQ]-K-[STG]-[LFMI]-x-[GAS]-[PGAC]-[RQ]-[GSARH]-[GA]. |
| Serine proteases, subtilase family, aspartic acid active site | [STAIV]-{ERDL}-[LIVMF]-[LIVM]-D-[DSTA]-G-[LIVMFC]-x(2,3)-[DNH]. |
| Serine proteases, subtilase family, histidine active site | H-G-[STM]-x-[VIC]-[STAGC]-[GS]-x-[LIVMA]-[STAGCLV]-[SAGM]. |
| Serine proteases, subtilase family, serine active site | G-T-S-x-[SA]-x-P-x-{L}-[STAVC]-[AG]. |
| Serine proteases, trypsin family, histidine active site | [LIVM]-[ST]-A-[STAG]-H-C. |
| Serine proteases, trypsin family, serine active site | [DNSTAGC]-[GSTAPIMVQH]-x(2)-G-[DE]-S-G-[GS]-[SAPHV]-[LIVMFYWH]-[LIVMFYSTANQH]. |
| Serine proteases, V8 family, histidine active site | [ST]-G-[LIVMFYW](3)-[GN]-x(2)-T-[LIVM]-x-T-x(2)-H. |
| Serine proteases, V8 family, serine active site | T-x(2)-[GC]-[NQ]-S-G-S-x-[LIVM]-[FY]. |
| Serine/threonine dehydratases pyridoxal-phosphate attachment site | [DESH]-x(4,5)-[STVG]-{EVKD}-[AS]-[FYI]-K-[DLIFSA]-[RLVMF]-[GA]-[LIVMGA]. |
| Serine/Threonine protein kinases active-site signature | [LIVMFYC]-x-[HY]-x-D-[LIVMFY]-K-x(2)-N-[LIVMFYCT](3). |
| Serine/threonine specific protein phosphatases signature | [LIVMN]-[KR]-G-N-H-E. |
| Serpins signature | [LIVMFY]-{G}-[LIVMFYAC]-[DNQ]-[RKHQS]-[PST]-F-[LIVMFY]-[LIVMFYC]-x-[LIVMFAH]. |
| Serum albumin family signature | [FY]-x(6)-C-C-x(2)-{C}-x(4)-C-[LFY]-x(6)-[LIVMFYW]. |
| Serum amyloid A proteins signature | A-R-G-N-Y-[ED]-A-x-[QKR]-R-G-x-G-G-x-W-A. |
| Shiga/ricin ribosomal inactivating toxins active site signature | [LIVMA]-x-[LIVMSTA](2)-x-E-[SAGV]-[STAL]-R-[FY]-[RKNQST]-x-[LIVM]-[EQS]-x(2)-[LIVMF]. |
| Shikimate kinase signature | [KR]-x(2)-E-x(3)-[LIVMF]-x(8,12)-[LIVMF](2)-[SA]-x-G(3)-x-[LIVMFG]. |
| Short hematopoietin receptor family 1 signature | [LIVF]-x(9)-[LIV]-[RK]-x(9,20)-W-S-x-W-S-x(4)-[FYW]. |
| Short hematopoietin receptor family 2 signature | [LIVM]-x-C-x-W-x(2)-G-x(5)-D-x(2)-Y-x-[LIVM]-x(10,14)-C. |
| Short-chain dehydrogenases/reductases family signature | [LIVSPADNK]-x(9)-{P}-x(2)-Y-[PSTAGNCV]-[STAGNQCIVM]-[STAGC]-K-{PC}-[SAGFYR]-[LIVMSTAGD]-x-{K}-[LIVMFYW]-{D}-x-{YR}-[LIVMFYWGAPTHQ]-[GSACQRHM]. |
| Sigma-54 factors family signature 1 | P-[LIVM]-x-[LIVM]-x(2)-[LIVM]-A-x(2)-[LIVMFT]-x(2)-[HS]-x-S-T-[LIVM]-S-R. |
| Sigma-54 factors family signature 2 | R-R-T-[IV]-[ATN]-K-Y-R. |
| Sigma-54 interaction domain ATP-binding region A signature | [LIVMFY](3)-x-G-[DEQ]-[STE]-G-[STAV]-G-K-x(2)-[LIVMFY]. |
| Sigma-54 interaction domain ATP-binding region B signature | [GS]-x-[LIVMFA]-x(2)-[AS]-[DNEQASH]-[GNEKT]-G-[STIM]-[LIVMFY](3)-[DE]-[EK]-[LIVM]. |
| Sigma-54 interaction domain C-terminal part signature | [FYW]-P-[GS]-N-[LIVM]-R-[EQ]-L-x-[NHAT]. |
| Sigma-70 factors ECF subfamily signature | [STAIV]-[PQDEL]-[DE]-[LIV]-[LIVTA]-Q-x-[STAV]-[LIVMFYC]-[LIVMAK]-x-[GSTAIV]-[LIMFYWQ]-x(12,14)-[STAP]-[FYW]-[LIF]-x(2)-[IV]. |
| Sigma-70 factors family signature 1 | [DE]-[LIVMF](2)-[HEQS]-x-G-x-[LIVMFA]-G-L-[LIVMFYE]-x-[GSAM]-[LIVMAP]. |
