Protein domains in Prosite database.
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| PTN/MK heparin-binding protein family signature 2 | C-[KR]-[LIVM]-P-C-N-W-K-K-x-F-G-A-[DE]-C-K-Y-x-F-[EQ]-x-W-G-x-C. |
| PTR2 family proton/oligopeptide symporters signature 1 | [GA]-[GAS]-[LIVMFYWA]-[LIVM]-[GAS]-D-x-[LIVMFYWT]-[LIVMFYW]-G-x(3)-[TAV]-[IV]-x(3)-[GSTAV]-x-[LIVMF]-x(3)-[GA]. |
| PTR2 family proton/oligopeptide symporters signature 2 | [FYT]-x(2)-[LMFY]-[FYV]-[LIVMFYWA]-x-[IVG]-N-[LIVMAG]-G-[GSA]-[LIMF]. |
| PTS EIIA domains phosphorylation site signature 1 | G-x(2)-[LIVMFA]-[LIVMF](2)-H-[LIVMF]-G-[LIVMF]-x-T-[LIVA]. |
| PTS EIIA domains phosphorylation site signature 2 | [DENQ]-x(6)-[LIVMF]-[GA]-x(2)-[LIVM]-A-[LIVM]-P-H-[GAC]. |
| PTS EIIB domains cysteine phosphorylation site signature | N-[LIVMFY]-x(5)-C-x-T-R-[LIVMF]-x-[LIVMF]-x-[LIVM]-x-[DQEN]. |
| PTS HPR component histidine phosphorylation site signature | G-[LIVM]-H-[STAV]-R-[PAS]-[GSTA]-[STAMVN]. |
| PTS HPR component serine phosphorylation site signature | [GSTADE]-[KREQSTIV]-x-{EPRK}-{VPGL}-x-[KRDN]-S-[LIVMF](2)-{EVPL}-[LIVM]-{EATN}-x-[LIVM]-[GADE]. |
| Purine and other phosphorylases family 1 signature | [GST]-x-G-[LIVM]-G-x-[PA]-S-x-[GSTAL]-[IL]-x(3)-E-L. |
| Purine and other phosphorylases family 2 signature | [LIVF]-x(3)-[GS]-x(2)-H-x-[LIVMFY]-x(4)-[LIVMF]-x(3)-[ATV]-x(1,2)-[LIVM]-x-[ATV]-x(4)-[GN]-x(3,4)-[LIVMF](2)-x(2)-[STN]-[SAGT]-x-G-[GS]-[LIVM]. |
| Purine/pyrimidine phosphoribosyl transferases signature | [LIVMFYWCTA]-[LIVM]-[LIVMA]-[LIVMFC]-[DE]-D-[LIVMS]-[LIVM]-[STAVD]-[STAR]-[GAC]-x-[STAR]. |
| Putative AMP-binding domain signature | [LIVMFY]-{E}-{VES}-[STG]-[STAG]-G-[ST]-[STEI]-[SG]-x-[PASLIVM]-[KR]. |
| Pyridine nucleotide-disulphide oxidoreductases class-I active site | G-G-x-C-[LIVA]-x(2)-G-C-[LIVM]-P. |
| Pyridine nucleotide-disulphide oxidoreductases class-II active site | C-x(2)-C-D-[GAS]-x(2,4)-[FYA]-x(4)-[LIVMAT]-x(0,1)-[LIVM](2)-[GI]-[GDS]-[GRD]-[DN]. |
| Pyridoxamine 5'-phosphate oxidase signature | [LIVFMYWA]-E-F-W-[QHGENRAMVYLCF]-x(4)-[RW]-[LIVMK]-[HN]-[DNESIT]-R. |
| Pyrokinins signature | F-[GSTV]-P-R-L-[G>]. |
| Pyrrolidone-carboxylate peptidase cysteine active site | [LIVF]-x-[GSAVC]-x-[LIVM]-S-x-[STAD]-A-G-x-[FY]-[LIVN]-C-[DNS]. |
| Pyrrolidone-carboxylate peptidase glutamic acid active site | G-x(2)-[GAP]-x(4)-[LIV]-[ST]-x-E-[KR]-[LIVC]-[AG]-x-[NG]. |
| Pyruvate kinase active site signature | [LIVAC]-x-[LIVM](2)-[SAPCV]-K-[LIV]-E-[NKRST]-x-[DEQHS]-[GSTA]-[LIVM]. |
| Quinone oxidoreductase / zeta-crystallin signature | [GSDN]-[DEQHKM]-x(2)-L-x(3)-[SAG](2)-G-G-x-G-x(4)-Q-x(2)-[KRS]. |
| Radical activating enzymes signature | [GVPS]-x-[GKS]-x-[KRS]-x(3)-[FL]-x(2)-G-x(0,1)-C-x(3)-C-x(2)-C-x-[NLF]. |
| Ras GTPase-activating proteins domain profile | [GSNA]-x-[LIVMF]-[FYCI]-[LIVMFY]-R-[LIVMFY](2)-[GACNS]-[PAV]-[AV]-[LIV]-[LIVM]-[SGANT]-P. |
| Ras Guanine-nucleotide exchange factors domain signature | [VI]-P-[FYWVI]-x-[GPSV]-x(2)-[LIVMFYK]-x-[DNE]-[LIVM]-x(13,35)-[IVL]-N-[FYME]-x-K. |
| recA signature | A-L-[KR]-[IF]-[FY]-[STA]-[STAD]-[LIVMQ]-R. |
| Receptor tyrosine kinase class II signature | [DN]-[LIV]-Y-x(3)-Y-Y-R. |
| Receptor tyrosine kinase class III signature | G-x-H-x-N-[LIVM]-V-N-L-L-G-A-C-T. |
| Receptor tyrosine kinase class V signature 1 | F-x-[DN]-x-[GAW]-[GAS]-C-[LIVM]-[SA]-[LIVM](2)-[SA]-[LV]-[KRHQ]-[LIVA]-x(3)-[KREQT]-C-[PSAWR]. |
| Receptor tyrosine kinase class V signature 2 | C-x(2)-[DE]-G-[DEQKRG]-W-x(2,3)-[PAQ]-[LIVMT]-[GT]-x-C-x-C-x(2)-G-[HFY]-[EQ]. |
| RecF protein signature 1 | [LIFV]-x(6)-[LIF]-[LIVF]-x-[GSDE]-[GSTADNPE]-[PASG]-x(2)-R-R-x-[FYW]-[LIVMF]-[DN]. |
| RecF protein signature 2 | [LIV]-[LIFYMV]-x-[LIVM]-D-[DEA]-[LIVF]-x(2)-[EHCGK]-L-D-x(2)-[KRH]-x(3)-[LIVF]. |
| RecR protein signature | C-x(2)-C-x(3,5)-[STACD]-x(4)-C-x-[LIVFQ]-C-x(4)-[RD]-[NQDS]. |
| Regulator of chromosome condensation (RCC1) signature 1 | G-x-N-D-x(2)-[AV]-L-G-R-x-T. |
| Regulator of chromosome condensation (RCC1) signature 2 | [LIVMFA]-[STAGC](2)-G-x-{TAV}-H-[STAGLI]-[LIVMFA]-{KI}-[LIVM]. |
| Renal dipeptidase active site | [LIVM]-E-G-[GA]-x(2)-[LIVMF]-x(6)-L-x(3)-Y-x(2)-G-[LIVM]-R. |
| Respiratory chain NADH dehydrogenase 30 Kd subunit signature | E-R-E-x(2)-[DE]-[LIVMFY](2)-x(6)-[HK]-x(3)-[KRP]-x-[LIVM]-[LIVMYS]. |
| Respiratory chain NADH dehydrogenase 49 Kd subunit signature | [LIVMH]-H-[RT]-[GA]-x-E-K-[LIVMTN]-x-E-x-[KRQ]. |
| Respiratory-chain NADH dehydrogenase 20 Kd subunit signature | [GN]-x-[DE]-[KRHST]-[LIVMFA]-[LIVMF]-P-[IV]-D-[LIVMFYWA]-[LIVMFYWK]-x-P-x-C-P-[PT]. |
| Respiratory-chain NADH dehydrogenase 24 Kd subunit signature | [DKG]-x(2)-[FLV]-[STKD]-x(5)-C-[LMNQ]-[GA]-x-C-x(2)-[GA]-P. |
| Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1 | G-[AM]-G-[AR]-Y-[LIVM]-C-G-[DE](2)-[STA](2)-[LIM](2)-[END]-S. |
| Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2 | E-[ST]-C-G-x-C-x-P-C-R-x-G. |
| Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1 | P-x(2)-C-[YWSD]-x(7)-[GA]-x-C-R-x-C. |
| Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2 | C-P-x-C-[DE]-x-[GS](2)-x-C-x-L-Q. |
| Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3 | R-C-[LIVM]-x-C-x-R-C-[LIVMT]-x-[LMFY]. |
| Respiratory-chain NADH dehydrogenase subunit 1 signature 1 | G-[LIVMFYKRSAQT]-[LIVMAGPF]-[QAM]-x-[LIVMFYCA]-x-D-[AGIM]-[LIVMFTA]-[KS]-[LVMYSTI]-[LIVMFYGA]-x-[KRE]-[EQG]. |
| Respiratory-chain NADH dehydrogenase subunit 1 signature 2 | P-F-D-[LIVMFYQN]-[STAGPVMI]-E-[GACS]-E-x(0,2)-[EQLN]-[LIVMS]-x(1,2)-G. |
| Rhodanese C-terminal signature | [AV]-x(2)-[FY]-[DEAP]-G-[GSA]-[WF]-x-E-[FYW]. |
| Rhodanese signature 1 | [FY]-x(3)-H-[LIV]-P-G-A-x(2)-[LIVF]. |
| Ribonuclease II family signature | [HI]-[FYE]-[GSTAM]-[LIVM]-x(4,5)-Y-[STALV]-x-[FWVAC]-[TV]-[SA]-P-[LIVMA]-[RQ]-[KR]-[FY]-x-D-x(3)-[HQ]. |
| Ribonuclease III family signature | [DEQ]-[KRQT]-[LMF]-E-[FYW]-[LV]-G-D-[SARHG]. |
| Ribonuclease PH signature | [CA]-[DE]-[LIVM](2)-[NQV]-[GTA]-D-[GA]-[SG]-x(2,3)-[TAVLC]-[AT]. |
| Ribonuclease T2 family histidine active site 1 | [FYWL]-x-[LIVM]-H-G-L-[WY]-P. |
| Ribonuclease T2 family histidine active site 2 | [LIVMF]-x(2)-[HDGTY]-[EQ]-[FYW]-x-[KRT]-H-[GA]-x-C. |
| Ribonucleotide reductase large subunit signature | W-x(2)-[LIVF]-x(6,7)-G-[LIVM]-[FYRA]-[NH]-x(3)-[STAQLIVM]-[ASC]-x(2)-[PA]. |
| Ribonucleotide reductase small subunit signature | [IVMSEQ]-E-x(1,2)-[LIVTA]-[HY]-[GSA]-x-[STAVM]-Y-x(2)-[LIVMQ]-x(3)-[LIVFY]-[IVFYCSA]. |
| Ribosomal protein L1 signature | [IMGV]-x(2)-[LIVA]-x(2,3)-[LIVMY]-[GAS]-x(2)-[LMSF]-[GSNH]-[PTKR]-[KRAVG]-[GN]-x-[LIMF]-P-[DENSTKQPRAGVI]. |
| Ribosomal protein L10 signature | [KNQ]-x(2)-{K}-x(3)-{A}-{L}-x(9)-[LIVMFY]-x(2)-[DENHR]-x(2)-[GS]-[LIVMF]-[STDNQC]-[VTA]-x-[DENQKHPSA]-[LIVMSAD]-x(2)-[LIMF]-[KR]. |
| Ribosomal protein L10e signature | A-D-R-x(3)-[GR]-[MH]-R-x-[SAP]-[FYW]-G-[KRVTS]-[PANI]-x-[GS]-x(1,2)-A-[KRLV]-[LIVQ]. |
| Ribosomal protein L11 signature | [RKN]-x-[LIVM]-x-G-[ST]-x(2)-[SNQ]-[LIVM]-G-x-{M}-[LIVM]-x(0,1)-[DENG]. |
| Ribosomal protein L13 signature | [LIVM]-[KRVLYFS]-[GKR]-M-[LIV]-[PST]-x(4,5)-[GSKR]-[NQEKRAH]-x(5)-[LIVM]-x-[AIVL]-[LFYV]-x-[GDNS]. |
| Ribosomal protein L13e signature | [KR]-x-G-[KR]-G-F-[ST]-[LVF]-x-E-[LVI]-x(3)-G. |
| Ribosomal protein L14 signature | [GA]-[LIV](3)-x(9,10)-[DNS]-G-x(4)-[FY]-x(2)-[NT]-x(2)-V-[LIV]. |
| Ribosomal protein L15 signature | [KR]-[LIVM](2)-[GASL]-x-[GT]-x-[LIVMA]-x(2,5)-[LIVMF]-x-[LIVMF]-x(3,4)-[LIVMFCA]-[ST]-x(2)-A-x(3)-[LIVM]-x(3)-G. |
| Ribosomal protein L15e signature | [DENT]-[KR]-[AL]-R-x-[LIQ]-G-[FY]-x-[SAP]-x(2)-G-[LIVMFY]-[LIVMFYKS]-[LIVMFY]-[LIVMFYA]-R-x-[RNAS]-[IVL]-x-[KRC]-G. |
| Ribosomal protein L16 signature 1 | [KRG]-[KR]-x-[GSAC]-[KRQVA]-[LIVMK]-[WY]-[LIVM]-[KRN]-[LIVM]-[LFY]-[APK]. |
| Ribosomal protein L16 signature 2 | R-M-G-x-[GR]-K-G-x(4)-[FWKR]. |
| Ribosomal protein L17 signature | [IL]-x-[STV]-[GT]-x(2)-[KR]-x-[KRAF]-x(6)-[DE]-x-[LIMV]-[LIVMT]-[TE]-x-[STAG]-[KR]. |
| Ribosomal protein L18e signature | [KREWDI]-x-L-x(2)-[PSRG]-[KRS]-x(2)-[RHY]-[PSA]-x-[LIVM]-[NSA]-[LIVM]-x-[RK]-[LIVM]. |
| Ribosomal protein L19 signature | [LIVMF]-x-[KRGTIEQSN]-x-[GSAIYN]-[KRQDAVLSIH]-[VGAIT]-[RSNAK]-x(0,1)-[KRAQ]-[SAKG]-[KYR]-[KLI]-[LYSFT]-[YF]-[LIM]-[RK]. |
| Ribosomal protein L19e signature | Q-[KR]-R-[LIVM]-x-[SA]-x(4)-[CV]-G-x(3)-[IV]-[WK]-[LIVF]-[DNSV]-[PE]. |
| Ribosomal protein L1e signature | [NP]-x(3)-[KRM]-x(2)-A-[LIVTK]-x-[SA]-[AC]-[LIV]-x-[ALCM]-[STL]-[SGAKTI]-x(7)-[RK]-[GS]-H. |
| Ribosomal protein L2 signature | P-x(2)-R-G-[STAIV](2)-x-N-[APK]-x-[DE]. |
| Ribosomal protein L20 signature | K-x(3)-[KRCV]-x-[LIVM]-W-[IVN]-[STNALVQCMI]-[RH]-[LIVM]-[NS]-x(3)-[RKHSG]. |
| Ribosomal protein L21 signature | [IVTL]-x(3)-[KR]-x(3)-[KRQ]-[KT]-x(6)-G-[HFY]-[RK]-[RQT]-x(2)-[STL]. |
| Ribosomal protein L21e signature | [GN]-[DEQ]-x-V-x(10,11)-[GVT]-x(2)-[FYHDN]-x(2)-[FY]-x-G-x-[TV]-G. |
| Ribosomal protein L22 signature | [RKQN]-x(2)-{G}-x-[RH]-[GAS]-x-G-[KRQS]-x(8)-{L}-[HDN]-[LIVM]-{A}-[LIVMS]-x-[LIVM]. |
| Ribosomal protein L23 signature | [RK](2)-[AM]-[IVFYT]-[IV]-[RKT]-L-[STANEQK]-x(7)-[LIVMFT]. |
| Ribosomal protein L24 signature | [GDEN]-D-x-[IV]-x-[IV]-[LIVMA]-x-G-x(2)-[KRA]-[GNQK]-x(2,3)-[GA]-x-[IV]. |
| Ribosomal protein L24e signature | [FY]-x-[GSHE]-x(2)-[IVLF]-x-P-[GA]-x-G-x(2)-[FYV]-x-[KRHE]-x-D. |
| Ribosomal protein L27 signature | G-x-[LIVM](2)-x-R-Q-R-G-x(5)-G. |
| Ribosomal protein L27e signature | G-K-[NS]-x-W-F-F-x(2)-L-[RH]-F>. |
| Ribosomal protein L29 signature | [KNQS]-[PSTLNH]-{D}-{F}-[LIVMFA]-[KRGSADN]-x-[LIVYSTA]-[KR]-[KRHQS]-[DESTANQRL]-[LIV]-A-[KRCQVT]-[LIVMA]. |
| Ribosomal protein L3 signature | [FL]-x(6)-[DN]-x(2)-[AGS]-x-[ST]-x-G-[KRH]-G-x(2)-G-x(3)-R. |
| Ribosomal protein L30 signature | [IVTAS]-[LIVM]-x(2)-[LF]-x-[LI]-x-[KRHQEG]-x(2)-[STNQH]-x-[IVTR]-x(10)-[LMSN]-[LIV]-x(2)-[LIVA]-x(2)-[LMFY]-[IVT]. |
| Ribosomal protein L30e signature 1 | [STA]-x(5)-G-x-[QKRN]-x(2)-[LIVMQ]-[KRQT]-x(2)-[KR]-x-[GS]-x(2)-[KQ]-x-[LIVM](3). |
| Ribosomal protein L30e signature 2 | [DE]-[LM]-G-[STALPD]-x(2)-[GK]-[KR]-x(6)-[LIVM]-x-[LIVM]-x-[DEN]-x-[GI]. |
| Ribosomal protein L31 signature | [DES]-[IVT]-x(4)-H-[PT]-[FAVY]-[FYW]-[TISN]-x(9,13)-[GN]-[KRHNQ]. |
| Ribosomal protein L31e signature | [VI]-[KRWVI]-[LIV]-[DSAG]-x(2)-[LIV]-[NS]-x-[AKQEHFYLCT]-x-W-x-[KRQE]-[GS]. |
| Ribosomal protein L32e signature | F-x-R-x(4)-[KRL]-x(2)-[KRT]-[LIVMFT]-x(3,5)-W-R-[KR]-x(2)-G. |
| Ribosomal protein L33 signature | [YW]-x-[STKV]-x-[KR]-[NSKQ]-x(3,4)-[PATQS]-x(1,2)-[LIVMF]-[EAQVSIT]-x(2)-K-[FYH]-[CSD]. |
| Ribosomal protein L34 signature | [KFQ]-[RGMP]-[TN]-[FYWL]-[EQSG]-x(5)-[KRHS]-x(4,5)-G-F-x(2)-R. |
| Ribosomal protein L34e signature | [ST]-x-S-x-[KRQ]-x(4)-[KR]-[TL]-P-[GS]-[GN]. |
| Ribosomal protein L35 signature | K-[STNV]-{F}-x-[GSAM]-[SAILV]-x-[KRA]-R-[IVFY]-x(14,16)-[GSANQKR]-H. |
| Ribosomal protein L35Ae signature | G-[KT]-[LIVM]-x-[RD]-x-H-G-x(2)-G-x-V-x-[AVS]-x-F-x(3)-[LI]-P. |
| Ribosomal protein L36 signature | [CHDS]-x(2)-[CND]-x(2)-[LIVM]-x-R-x(3)-[LIVMNR]-x-[LIVM]-x-[CN]-x(3,4)-[KRSN]-[HLFR]-x-[QCAV]-x-Q. |
| Ribosomal protein L36e signature | P-Y-E-[KR]-R-x-[LIVMT]-[DE]-[LIVM](2)-[KR]. |
| Ribosomal protein L37e signature | G-T-x-[SAVTP]-x-G-x-[KRHIM]-x(4,5)-H-x(2)-C-x-R-C-G. |
| Ribosomal protein L39e signature | [KRM]-[PTKS]-x(3)-[LIVMFG]-x(2)-[NHS]-x(3)-R-[DNHY]-W-R-[RS]. |
| Ribosomal protein L44e signature | K-x-[TV]-K-K-x(2)-L-[KR]-x(2)-C. |
| Ribosomal protein L5 signature | [LIVM]-x(2)-[LIVM]-[STAVC]-[GE]-[QV]-x(2)-[LIVMA]-x-[STC]-x-[STAG]-[KRH]-x-[STA]. |
| Ribosomal protein L6 signature 1 | [PS]-[DENS]-x-Y-K-[GA]-K-G-[LIVM]. |
